Title

Novel thermostable Y-family polymerases: applications for the PCR amplification of damaged or ancient DNAs

Authors

Authors

J. P. McDonald; A. Hall; D. Gasparutto; J. Cadet; J. Ballantyne;R. Woodgate

Comments

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Abbreviated Journal Title

Nucleic Acids Res.

Keywords

SYN THYMINE DIMER; SULFOLOBUS-SOLFATARICUS; CRYSTAL-STRUCTURE; ERROR-PRONE; BYPASS; LESION; REPLICATION; SEQUENCE; ETA; SPECIFICITY; Biochemistry & Molecular Biology

Abstract

For many years, Taq polymerase has served as the stalwart enzyme in the PCR amplification of DNA. However, a major limitation of Taq is its inability to amplify damaged DNA, thereby restricting its usefulness in forensic applications. In contrast, Y-family DNA polymerases, such as Dpo4 from Sulfolobus solfataricus, can traverse a wide variety of DNA lesions. Here, we report the identification and characterization of five novel thermostable Dpo4-like enzymes from Acidianus infernus, Sulfolobus shibatae, Sulfolobus tengchongensis, Stygiolobus azoricus and Sulfurisphaera ohwakuensis, as well as two recombinant chimeras that have enhanced enzymatic properties compared with the naturally occurring polymerases. The Dpo4-like polymerases are moderately processive, can substitute for Taq in PCR and can bypass DNA lesions that normally block Taq. Such properties make the Dpo4-like enzymes ideally suited for the PCR amplification of damaged DNA samples. Indeed, by using a blend of Taq and Dpo4-like enzymes, we obtained a PCR amplicon from ultraviolet-irradiated DNA that was largely unamplifyable with Taq alone. The inclusion of thermostable Dpo4-like polymerases in PCRs, therefore, augments the recovery and analysis of lesion-containing DNA samples, such as those commonly found in forensic or ancient DNA molecular applications.

Journal Title

Nucleic Acids Research

Volume

34

Issue/Number

4

Publication Date

1-1-2006

Document Type

Article

Language

English

First Page

1102

Last Page

1111

WOS Identifier

WOS:000235923500011

ISSN

0305-1048

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