Title
Sequence dependence of DNA translocation through a Nanopore
Abbreviated Journal Title
Phys. Rev. Lett.
Keywords
MONTE-CARLO-SIMULATION; POLYMER TRANSLOCATION; POLYNUCLEOTIDE MOLECULES; MEMBRANE; DYNAMICS; DRIVEN; DISCRIMINATION; TRANSPORT; PORE; Physics, Multidisciplinary
Abstract
We investigate the dynamics of DNA translocation through a nanopore using 2D Langevin dynamics simulations, focusing on the dependence of the translocation dynamics on the details of DNA sequences. The DNA molecules studied in this work are built from two types of bases A and C, which have been shown previously to have different interactions with the pore. We study DNA with repeating blocks A(n)C(n) for various values of n and find that the translocation time depends strongly on the block length 2n as well as on the orientation of which base enters the pore first. Thus, we demonstrate that the measurement of translocation dynamics of DNA through a nanopore can yield detailed information about its structure. We have also found that the periodicity of the block sequences is contained in the periodicity of the residence time of the individual nucleotides inside the pore.
Journal Title
Physical Review Letters
Volume
100
Issue/Number
5
Publication Date
1-1-2008
Document Type
Article
Language
English
First Page
4
WOS Identifier
ISSN
0031-9007
Recommended Citation
"Sequence dependence of DNA translocation through a Nanopore" (2008). Faculty Bibliography 2000s. 658.
https://stars.library.ucf.edu/facultybib2000/658
Comments
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