Title

Translocation Dynamics Of A Semiflexible Chain Under A Bias: Comparison With Tension Propagation Theory

Abstract

We study translocation dynamics of a semi-flexible polymer through a nanoscopic pore in two dimensions (2D) using Langevin dynamics simulation in presence of an external force inside the pore. We observe that for a given chain length N the mean first passage time (MFPT)〈τ〉 increases for a stiffer chain. By repeating the calculation for various chain lengths N and bending rigidity parameter κ b we calculate the translocation exponent α (〈τ〉 ∼ N α). For chain lengths N and bending rigidity κ b considered in this paper we find that the translocation exponent satisfies the inequality α < 1 + ν, where is the equilibrium Flory exponent for a given chain stiffness, as previously observed in various simulation studies for fully flexible chains. We observe that the peak position of the residence time W(s) as a function of the monomer index s shifts at a lower s-value with increasing chain stiffness κ b . We also monitor segmental gyration 〈R g (s)〉 both at the cis and trans side during the translocation process and find that for κ b ≠ 0 the late time cis conformations are nearly identical to the early time trans conformations, and this overlap continues to increase for stiffer chains. Finally, we try to rationalize dependence of various quantities on chain stiffness κ b using Sakaue's tension propagation (TP) theory [Phys. Rev. E 76, 021803 (2007)] and Brownian Dynamics Tension Propagation (BDTP) theory due to Ikonen et al. [Phys. Rev. E 85 051803 (2012); J. Chem. Phys. 137 085101 (2012)] originally developed for a fully flexible chain to a semi-flexible chain. © 2013 Pleiades Publishing, Ltd.

Publication Date

9-1-2013

Publication Title

Polymer Science - Series C

Volume

55

Issue

1

Number of Pages

60-69

Document Type

Article

Personal Identifier

scopus

DOI Link

https://doi.org/10.1134/S1811238213070011

Socpus ID

84881174341 (Scopus)

Source API URL

https://api.elsevier.com/content/abstract/scopus_id/84881174341

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